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Topia!: Science: Biology: Biochemistry and Molecular Biology: Software (35)
See Also:
Oligo Software - Oligo is a Molecular Biology Insights product. It has been created for difficult sequencing and oligo projects. First on the market (1989). Redasoft - Makers of software with a restriction enzyme database to design experiments and produce high quality graphics. Southwest Parallel Software - High performance versions of Phil Green's Phrap, Swat and Cross-Match sequence analysis tools. [UNIX, download trial versions] Forager - PC software that calculates equilibria of molecules that physically interact with each other. Molecular Programming LLC - Sequence Quickie-Calc, an easy to use, calculator like program for DNA and protein analysis. Sequence Alignment and Modeling System - Implementation of hidden Markov models for sequence analysis. Free UNIX software for nonprofit groups, and sequences can be submitted online. NIH Center for Molecular Modeling - Search engine for visualizing 3-D biomolecular models. Delta2D - Difference Analysis of 2D Gels - Compare 2D gel electrophoresis images from different experiments or samples. Produce dual channel images that show clearly the differences and similarities between two gels. The Vienna RNA Package - A free suit of software for the analysis of RNA secondary structure, including structure prediction and comparison as well as sequence design. Scanalytics Gel Analysis Software - Scanalytics makes gel analysis software for Windows and Macintosh. Linux for Biotechnology - A collection of biotechnology related software for Linux. Clufavor - Program for cluster and factor analysis of cDNA and oligonucleotide microarray data. BioKin - Produces software for data analysis in enzyme kinetics, receptor binding, and viral dynamics. Also provide consulting services and custom-software development for high-throughput screening in drug discovery. GenomeScan - Server for predicting the locations and exon-intron structures in genomic sequences, incorporating protein homology information when predicting genes from DNA sequence. GenScan Server - Identification of gene structures in genomic DNA. Southwest Biotechnology and Informatics Center - Sequence analysis tools including BLAST and sequence format tools. Sanger Pfam - Pfam has multiple sequence alignments and hidden Markov models covering many common protein domains. SigmaScan Pro - Version 5.0 for Windows PCs, provides image analysis for particle size analysis, image enhancement, colony size and counts for cell growth studies, gel band analysis in biomedical research from SPSS Inc., IL. ChemVis - Visualization of physico-chemical structures in VML Kinetic Imaging Ltd. - DNA damage analysis software for use with the comet assay technique for single cell electrophoresis from Wirral, UK. MDL Information Systems Inc.. - Tools for biological database manipulation. Sesame Project - Protein structure-function software in multiple modules. Chang Bioscience - Microarray analysis, lab inventory, and primer sequence database tools. PREMIER Biosoft International - Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics Protein Dynamics, Inc. - Molecular dynamics simulation software for proteins, dna, and rna, including 3D viewing of molecules. Offers downloadable demonstration version. AiO - All in One - a package of DNA/protein analysis programs Starfruit Technologies - Laboratory information management system (LIMS)for forensics. Molecular Toolbox - Links to programs and databases for online analysis of DNA, RNA and protein sequences from Pittsburg, PA. Blocks WWW Server - Resources for biological sequence analysis, including conserved region homology, consensus-degenerate PCR primer design and tutorial, at the Fred Hutchinson Cancer Research Center in Seattle, WA. Melanie Version 4 - Analyzes, annotates and queries 2D gel samples for DNA and proteomic applications. eLABorate Packages - Programs designed as educational exercise for planning experiments in enzyme kinetics, protein-ligand binding, protein purification and related projects from the University of York, UK. Staden Package - Introduction, documentation and downloads for DNA sequence analysis. Includes related courses in Cambridge, UK. SoftZymics - Package for statistical analysis of steady-state enzyme kinetic data, and presentation graphics, for Macintosh or Windows based computers. Previews, price and form to order from Princeton, NJ. PhenoSystems - Gensearch is a user-friendly locus specific software application assisting biologists in the analysis of DNA sequences, for potential mutation locations, interpreting their potential consequences. Contacts in Brussels, Belgium.
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